Exploring Reproducibility

Research Associate | Webber Group

2024-01-19

Quick Questions!

Discussion groups

Code Review

  • Join the team!
  • How does the community want it to be used?
    • Quick second pair of eyes on code snippet?
    • Methodological advice (QC cutoff, etc)?
    • Full review of project codebase?

Code Review continued

  • Acknowledgements for review?
    • GitHub has metrics
    • Authorship? Establish group rules, or discuss ad-hoc?
    • Minimal acknowledgement in GitHub Contributors file for reviewers?

Proposed workflow

  1. Make a repo on DRI GitHub Org (perhaps using the template!)
  2. Write and publish a registered report outlining the project
  3. Gather/analyse data
    1. Make ADDI workspace?
    2. Use existing pipelines if applicable (Nextflow)
    3. Containerise software environment (probably at end of project)

Proposed workflow continued

  1. Publish all the things!

Thanks for listening!

  • Here’s to making science slightly less crap!
  • Please get in touch about anything reproducibility related (or just just say hi :) - bernardo-harringtong@cardiff.ac.uk
  • Questions?

References