Exploring Reproducibility
Gabriel Mateus Bernardo Harrington
Research Associate | Webber Group
2024-01-19
Quick Questions!
Follow the link:
https://www.menti.com/alqq45q4oprd
Discussion groups
Each table has a topic to discuss for 10 minutes
Please add your thoughts on the topic to the shared document:
https://hackmd.io/@Coconut1019/BJJYscMY6/edit
Code Review
Join the team!
How does the community want it to be used?
Quick second pair of eyes on code snippet?
Methodological advice (QC cutoff, etc)?
Full review of project codebase?
Code Review continued
Acknowledgements for review?
GitHub has metrics
Authorship? Establish group rules, or discuss ad-hoc?
Minimal acknowledgement in GitHub Contributors file for reviewers?
Proposed workflow
Make a repo on DRI GitHub Org (perhaps using
the template
!)
Write and publish a
registered report
outlining the project
Gather/analyse data
Make ADDI workspace?
Use existing pipelines if applicable (Nextflow)
Containerise software environment (probably at end of project)
Proposed workflow continued
Publish all the things!
Pre-print ->
diamond open access
Data on relevant public repositories + ADDI?
generate DOI for code repo via
Zenodo
Thanks for listening!
Here’s to making science slightly less crap!
Please get in touch about anything reproducibility related (or just just say hi :) -
bernardo-harringtong@cardiff.ac.uk
Questions?
References